Detected as a riboswitch by 5 out of 20 classifiers
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5HSAA000494-0 Similarity: 0.986 Similarity: 0.985 Similarity: 0.984
UTR: 5HSAA000494-0
Gene: ABCF3
MFE: -17.422
ENS: 0.838
Length: 59.
Predicted Ligands:
fluoride - 13/20
glutamine - 3/20
SAM - 2/20
 RS: URS0000BE58B7_111780
MFE: -11.977
Ligand: glutamine
Species: Stanieria cyanosphaera PCC 7437 Glutamine riboswitch
 RS: URS0000D696BA_12908
MFE: -19.232
Ligand: SAM
Species: unclassified sequences SAM-VI riboswitch
 RS: URS0000C00297_55779
MFE: -14.956
Ligand: fluoride
Species: Moorella glycerini Fluoride riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA000494-0 URS0000BE58B7_111780 URS0000D696BA_12908 URS0000C00297_55779
Length 59. 58. 60. 59.
Similarity - 0.986 0.985 0.984
Ensemble Norm 0.838 - - -
MFE -17.422 -11.977 -19.232 -14.956
Ligands - glutamine SAM fluoride
Gene ABCF3 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 2.016 2.002 2.010
Length SE - 1. 1. 0.
Lev Distance - 17. 18. 21.
UBS 3. 2. 2. 3.
BS 0. 0. 0. 0.
ILL 0. 0. 0. 0.
ILR 0. 0. 0. 0.
H 3. 2. 2. 2.
BL 0. 0. 0. 1.
BR 0. 0. 0. 0.
UN 0.322 0.448 0.367 0.424

Sequences

Field Description
UTR seq + 25 acagcgacugcgcggacggguuccugaguggaacATGGCGACTTGCGCCGAAATCCTGC
UTR dot + 25 …(((….)))……(((((…..))))).(((((…..)))))………
RS 1 seq AUCGUUCAUCUCUUCUGUAAAGAGACGGAAGUAGGGACUAAACCCGAAGGAACGCGCC
RS 1 dot ………..(((((((……)))))))..(((……)))………….
RS 2 seq CGUAUCAGUGUGCCUCGCAUCCCGCGGGGCGAUAAGUCCUGAAGAAAGGGAUGAUAUGAC
RS 2 dot ……….((((((((…..))))))))….(((((…….)))))……..
RS 3 seq AACCCCAACGGCGAUGGAGCUCGCCUAACGCUCAGUGAGCUAAUAGCUCCUACCGAAAG
RS 3 dot ………(((((……)))))……..((.(((((…)))))))……..

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