Detected as a riboswitch by 3 out of 20 classifiers
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5HSAA000495-0 Similarity: 0.990 Similarity: 0.990 Similarity: 0.990
UTR: 5HSAA000495-0
Gene: ABCF3_0
MFE: -16.385
ENS: 0.824
Length: 45.
Predicted Ligands:
preQ_1 - 7/20
unknown - 7/20
SAM - 6/20
 RS: URS00021EDEB0_12908
MFE: -6.092
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
 RS: URS00021EDC21_12908
MFE: -6.092
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
 RS: URS00021EE0D5_12908
MFE: -8.392
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA000495-0 URS00021EDEB0_12908 URS00021EDC21_12908 URS00021EE0D5_12908
Length 45. 45. 45. 45.
Similarity - 0.990 0.990 0.990
Ensemble Norm 0.824 - - -
MFE -16.385 -6.092 -6.092 -8.392
Ligands - SAM SAM SAM
Gene ABCF3 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.012 3.012 3.012
Length SE - 0. 0. 0.
Lev Distance - 13. 13. 13.
UBS 3. 3. 3. 3.
BS 0. 0. 0. 0.
ILL 0. 1. 1. 0.
ILR 1. 1. 1. 2.
H 2. 1. 1. 1.
BL 0. 1. 1. 1.
BR 0. 0. 0. 0.
UN 0.156 0.267 0.267 0.267

Sequences

Field Description
UTR seq + 25 acagcgacugcgcggacgggATGGCGACTTGCGCCGAAATCCTGC
UTR dot + 25 …(((….)))…((((((((((…..))))…)))))).
RS 1 seq AACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAACGGAGCA
RS 1 dot ………..(((.((….(((((….)))))….))))).
RS 2 seq AACUUAUAACGGCUACCUGAAGUAAGUUUUUUUAUAAAUGGAGCA
RS 2 dot ………..(((.((….(((((….)))))….))))).
RS 3 seq UACAUGCAACGGCUUCCUGACGCGUGAGUGAUAAUCAAUGGAGCA
RS 3 dot ………..(((((.((((((….)))….)))..))))).

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