Detected as a riboswitch by 4 out of 20 classifiers
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5HSAA001291 Similarity: 0.987 Similarity: 0.986 Similarity: 0.986
UTR: 5HSAA001291
Gene: ACP2_0
MFE: -18.586
ENS: 0.771
Length: 55.
Predicted Ligands:
glutamine - 10/20
unknown - 8/20
cobalamin - 1/20
 RS: URS0000E60937_103855
MFE: -30.948
Ligand: unknown
Species: Bordetella hinzii sul1 RNA
 RS: URS0000C5672B_12908
MFE: -11.566
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C1A0A0_12908
MFE: -7.285
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA001291 URS0000E60937_103855 URS0000C5672B_12908 URS0000C1A0A0_12908
Length 55. 54. 54. 54.
Similarity - 0.987 0.986 0.986
Ensemble Norm 0.771 - - -
MFE -18.586 -30.948 -11.566 -7.285
Ligands - unknown glutamine glutamine
Gene ACP2 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.006 13.009 7.003
Length SE - 1. 1. 1.
Lev Distance - 16. 14. 16.
UBS 3. 4. 4. 3.
BS 0. 0. 0. 0.
ILL 0. 1. 0. 0.
ILR 0. 0. 1. 2.
H 2. 2. 1. 1.
BL 0. 1. 3. 1.
BR 1. 1. 2. 0.
UN 0.055 0.130 0.148 0.111

Sequences

Field Description
UTR seq + 25 agcuuguuugcugcauagauuacaacggugATGGCGGGCAAGCGGTCCGGCTGGA
UTR dot + 25 .(((((((((((((((………..))).))))))))))))..(((….)))
RS 1 seq GGUGGACCCGGCCGCGCCGGGUGGCUCGGCCGGGCGCCUAUCCCCCGGAAACUC
RS 1 dot ((((..((((((((.(((….))).))))))))))))..(((…)))…..
RS 2 seq AUCGUUCAACUUCAUUACGAAGUCGGAAGUAAGCGGAAGCUGAAGGAACGCAAC
RS 2 dot .((.((((.((((.((((……….))))…)))).)))).))…….
RS 3 seq AACGUUCAUCUUUUAAUGAAAGACGGAAGUAGGUUAGAACCGAAGGAACGCAAA
RS 3 dot ..(((((.(((((((((……………)))))))..))..)))))….

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