Detected as a riboswitch by 5 out of 20 classifiers
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5HSAA001335 Similarity: 0.984 Similarity: 0.982 Similarity: 0.980
UTR: 5HSAA001335
Gene: ACP6
MFE: -26.849
ENS: 0.841
Length: 87.
Predicted Ligands:
GMP - 6/20
cyclic-di-GMP - 5/20
glycine - 2/20
 RS: URS0000D668F2_12908
MFE: -35.137
Ligand: cyclic-di-GMP
Species: unclassified sequences Cyclic di-GMP-II riboswitch
 RS: URS0000D6A901_12908
MFE: -22.932
Ligand: cyclic-di-GMP
Species: unclassified sequences Cyclic di-GMP-II riboswitch
 RS: URS0000D6C0DF_12908
MFE: -27.111
Ligand: GMP
Species: unclassified sequences c-di-GMP-II-GAG riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA001335 URS0000D668F2_12908 URS0000D6A901_12908 URS0000D6C0DF_12908
Length 87. 87. 86. 85.
Similarity - 0.984 0.982 0.980
Ensemble Norm 0.841 - - -
MFE -26.849 -35.137 -22.932 -27.111
Ligands - cyclic-di-GMP cyclic-di-GMP GMP
Gene ACP6 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.006 3. 4.
Length SE - 0. 1. 4.
Lev Distance - 21. 22. 21.
UBS 7. 7. 6. 6.
BS 0. 0. 0. 0.
ILL 2. 2. 1. 1.
ILR 2. 1. 1. 2.
H 3. 3. 3. 3.
BL 1. 2. 1. 0.
BR 2. 1. 2. 1.
UN 0.172 0.092 0.163 0.176

Sequences

Field Description
UTR seq + 25 uugggacgggucccugaguaggugaggagccucaacccggagggcagcgagggccuaccaccATGATCACTGGTGTGTTCAGCATGC
UTR dot + 25 ..((((….))))……(((((((..((((..(((…)))….)))).)))..)))).(((.(((….))).)))……
RS 1 seq UUCCCAAGGGGAGGCGGUGAACCCUCGAGCCCAAGAUGGGCGCCAUGGGCCGAGGGGGAGCCAGUGGCGCAACCAGCCCCUAAAGCC
RS 1 dot (((((…)))))..(((…((((((.(((((…(((…))))))))))))))…)))((.(((…….))).))……
RS 2 seq CGAAGCAGUAGAGGCUUGGAAGUUCGCCCCAAAGAUGGGCGCUUACGGGACGGACAGAGUCAGUGGCGCAACCUGCUACUUCAUAA
RS 2 dot (.((((…….)))).)..((((((((..(((…….)))..))).)))))……(((((((…..)))))))……
RS 3 seq ACAUAGUAGAGGCUAAGAUACGCGGACCGCUAAGGCGGGCACCGAGGUCCGCGAGGAGCAAGUGGUGCGACCGGCUACCGAGGAG
RS 3 dot …((((….))))…..(((((((((((……)))…..)))))))).(((((..((……))..))).))……

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