Detected as a riboswitch by 7 out of 20 classifiers
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5HSAA018550 Similarity: 0.989 Similarity: 0.988 Similarity: 0.988
UTR: 5HSAA018550
Gene: CCDC51
MFE: -21.484
ENS: 0.837
Length: 57.
Predicted Ligands:
glutamine - 16/20
unknown - 4/20

 RS: URS0000BEAA8E_1604020
MFE: -12.438
Ligand: glutamine
Species: Candidatus Synechococcus spongiarum SP3 Glutamine riboswitch
 RS: URS0000C17D93_12908
MFE: -9.838
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C62480_12908
MFE: -9.838
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA018550 URS0000BEAA8E_1604020 URS0000C17D93_12908 URS0000C62480_12908
Length 57. 56. 57. 57.
Similarity - 0.989 0.988 0.988
Ensemble Norm 0.837 - - -
MFE -21.484 -12.438 -9.838 -9.838
Ligands - glutamine glutamine glutamine
Gene CCDC51 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 10. 4. 4.
Length SE - 1. 0. 0.
Lev Distance - 11. 15. 15.
UBS 3. 5. 4. 4.
BS 0. 0. 0. 0.
ILL 1. 1. 0. 0.
ILR 2. 1. 1. 1.
H 1. 1. 1. 1.
BL 1. 3. 1. 1.
BR 0. 1. 1. 1.
UN 0.088 0.107 0.105 0.105

Sequences

Field Description
UTR seq + 25 agacgauuggucgggccacgccagaucucaggATGGTGGCTCGAGGGCTTGTCCGAG
UTR dot + 25 .(((((….(((((((((.((……..))…)))))))))….)))))….
RS 1 seq CUCGUUGACCUGAUGCUCAGGCGGAAGUAGGACCUCUUGGCCCGAAGCAACGCACC
RS 1 dot ..(((((.(…..((.((((.((……..)).))))))…..))))))….
RS 2 seq UUCGUUCAUUUUGAUUAAUUUCAAAACGGAAGUAGACAUAUGUCGAAGGAACGCGUG
RS 2 dot ..(((((.((((((((((((((……)))))…..)).))))))))))))….
RS 3 seq UUCGUUCAUUUUGAUUAAUUUCAAGACGGAAGUAGACAUAUGUCGAAGGAACGCGUG
RS 3 dot ..(((((.((((((((((((((……)))))…..)).))))))))))))….

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