CLK2_1
Detected as a riboswitch by 20 out of 20 classifiers
5HSAA022812 | Similarity: 0.991 | Similarity: 0.966 | Similarity: 0.955 |
---|---|---|---|
UTR: 5HSAA022812 Gene: CLK2_1 MFE: -3.038 ENS: 0.985 Length: 26. Predicted Ligands: preQ_1 - 8/20 SAM - 7/20 unknown - 2/20 |
RS: URS0001A24B50_1907202 MFE: -10. Ligand: unknown Species: Chains: A,C,F,I,M,O from Roseobacter sp. (PDB 6YLB, chain F) |
RS: URS0000ABD446_1313296 MFE: -4.722 Ligand: preQ_1 Species: Paenibacillus uliginis N3/975 PreQ1 riboswitch |
RS: URS000080E32E_119072 MFE: -6.098 Ligand: preQ_1 Species: PREQ1 RIBOSWITCH from Caldanaerobacter subterraneus subsp. tengcongensis (PDB 6VUH, chain A) |
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Information
5’UTR | RS match 1 | RS match 2 | RS match 3 | |
---|---|---|---|---|
Link | - | RNAcentral | RNAcentral | RNAcentral |
ID | 5HSAA022812 | URS0001A24B50_1907202 | URS0000ABD446_1313296 | URS000080E32E_119072 |
Length | 26. | 26. | 32. | 33. |
Similarity | - | 0.991 | 0.966 | 0.955 |
Ensemble Norm | 0.985 | - | - | - |
MFE | -3.038 | -10. | -4.722 | -6.098 |
Ligands | - | unknown | preQ_1 | preQ_1 |
Gene | CLK2 | - | - | - |
Downstream protein | Genecard | - | - | - |
Similarity metrics
5’UTR | RS match 1 | RS match 2 | RS match 3 | |
---|---|---|---|---|
Struct SE | - | 4.013 | 3.052 | 3.078 |
Length SE | - | 0. | 36. | 49. |
Lev Distance | - | 11. | 9. | 11. |
UBS | 2. | 2. | 1. | 1. |
BS | 0. | 0. | 0. | 0. |
ILL | 0. | 1. | 0. | 0. |
ILR | 0. | 1. | 0. | 0. |
H | 1. | 1. | 1. | 1. |
BL | 1. | 0. | 0. | 0. |
BR | 1. | 0. | 0. | 0. |
UN | 0.115 | 0. | 0.344 | 0.394 |
Sequences
Field | Description |
---|---|
UTR seq + 25 | gATGCCGCATCCTCGAAGGTACCACT |
UTR dot + 25 | (.((((………..)))).)… |
RS 1 seq | GGUCACAACGGCUUCCUGGCGUGACC |
RS 1 dot | ((((((..(((….)))..)))))) |
RS 2 seq | AGAGGUUCGUGAACUCCCUCUAUAAAAAACUA |
RS 2 dot | (((((………..)))))……….. |
RS 3 seq | CUGGGUCGCAGUAACCCCAGUUAACAAAACAAG |
RS 3 dot | (((((……….)))))…………. |