Detected as a riboswitch by 3 out of 20 classifiers
arrow left to previous 5prime UTR page
5HSAA024437 Similarity: 0.991 Similarity: 0.991 Similarity: 0.990
UTR: 5HSAA024437
Gene: CORO1C
MFE: -9.757
ENS: 0.744
Length: 46.
Predicted Ligands:
SAM - 19/20
preQ_1 - 1/20

 RS: URS0000B74E45_1673631
MFE: -16.067
Ligand: SAM
Species: Maliponia aquimaris SAM/SAH riboswitch
 RS: URS00021EE168_12908
MFE: -9.183
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
 RS: URS0000D67A93_408172
MFE: -13.283
Ligand: SAM
Species: marine metagenome SAM/SAH riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
arrow right to the next 5prime UTR page
heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA024437 URS0000B74E45_1673631 URS00021EE168_12908 URS0000D67A93_408172
Length 46. 47. 45. 46.
Similarity - 0.991 0.991 0.990
Ensemble Norm 0.744 - - -
MFE -9.757 -16.067 -9.183 -13.283
Ligands - SAM SAM SAM
Gene CORO1C - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 1. 2.001 4.
Length SE - 1. 1. 0.
Lev Distance - 11. 11. 12.
UBS 4. 4. 3. 3.
BS 0. 0. 0. 0.
ILL 0. 1. 0. 1.
ILR 1. 1. 1. 1.
H 2. 2. 2. 2.
BL 1. 1. 1. 0.
BR 1. 1. 0. 0.
UN 0.087 0.106 0.111 0.109

Sequences

Field Description
UTR seq + 25 acuaggcgguuugguaacacgATGTATGGCCCTGGTAGTCAGCTGG
UTR dot + 25 ….(((.(((((……)))…)).)))(((((…..)))))
RS 1 seq AACCCGUCACAACGGCUUCCUGGCGUGACGGCGUCAUCAUUGGAGCA
RS 1 dot ….((((((..(((….)))..))))))((.(((….))).)).
RS 2 seq UUGCACGCACGGCUUCCUGACGCGUGAGUUUUAAUUAUCGGAGCA
RS 2 dot …(((((.(((….)))..))))).(((((…….))))).
RS 3 seq UAGCACGCAACGGCUUCCUGACGCGUGAGCUUUAAUUAUCGGAGCA
RS 3 dot …(((((..(((….)))..))))).(((((…….))))).

Back to Ensemble of 20 Table

Back to Ensemble of 1 Table