Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA029136-1 Similarity: 0.991 Similarity: 0.990 Similarity: 0.989
UTR: 5HSAA029136-1
Gene: DDX47_0
MFE: -9.696
ENS: 0.984
Length: 47.
Predicted Ligands:
SAM - 20/20 - 20/20


 RS: URS00021EDEC8_12908
MFE: -7.899
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
 RS: URS0000AB2AFF_408172
MFE: -10.099
Ligand: SAM
Species: marine metagenome SAM/SAH riboswitch
 RS: URS00021EDDBC_12908
MFE: -9.996
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA029136-1 URS00021EDEC8_12908 URS0000AB2AFF_408172 URS00021EDDBC_12908
Length 47. 47. 48. 46.
Similarity - 0.991 0.990 0.989
Ensemble Norm 0.984 - - -
MFE -9.696 -7.899 -10.099 -9.996
Ligands - SAM SAM SAM
Gene DDX47 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 2.011 2.006 3.032
Length SE - 0. 1. 1.
Lev Distance - 12. 12. 13.
UBS 4. 3. 3. 3.
BS 0. 0. 0. 0.
ILL 1. 1. 1. 1.
ILR 2. 2. 2. 1.
H 1. 1. 1. 1.
BL 2. 1. 1. 1.
BR 0. 0. 0. 0.
UN 0.191 0.298 0.271 0.370

Sequences

Field Description
UTR seq + 25 ccuacgcgcccauauucacuggATGGCGGCACCCGAGGAACACGATT
UTR dot + 25 (((.((.(((..(((((…)))))..)))…)))))………
RS 1 seq UUCUACUACAACGGCUUCCUGGCGUAGUUUGAAAUGUAAUUGGAGCG
RS 1 dot (((.(((((..(((….)))..)))))..)))…………..
RS 2 seq UGAUGCACGCAACGGCUUCCUGACGCGUGAGAUUAAAUUAUUGGAGCA
RS 2 dot ((((.(((((..(((….)))..)))))..))))………….
RS 3 seq CUACACGCAACGGCUUCCUGACGCGUGAGAUCAAACUAUUGGAGCA
RS 3 dot ((.(((((..(((….)))..)))))))……………..

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