Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA032963 Similarity: 0.993 Similarity: 0.992 Similarity: 0.990
UTR: 5HSAA032963
Gene: E2F5_0
MFE: -17.801
ENS: 1.
Length: 56.
Predicted Ligands:
glutamine - 20/20 - 20/20


 RS: URS0000C33F25_12908
MFE: -8.907
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C330AE_12908
MFE: -8.091
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C61C3B_12908
MFE: -7.541
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA032963 URS0000C33F25_12908 URS0000C330AE_12908 URS0000C61C3B_12908
Length 56. 56. 55. 55.
Similarity - 0.993 0.992 0.990
Ensemble Norm 1. - - -
MFE -17.801 -8.907 -8.091 -7.541
Ligands - glutamine glutamine glutamine
Gene E2F5 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 0. 3.006 3.006
Length SE - 0. 1. 1.
Lev Distance - 9. 9. 11.
UBS 3. 3. 2. 2.
BS 0. 0. 0. 0.
ILL 0. 0. 0. 0.
ILR 0. 0. 0. 0.
H 2. 2. 2. 2.
BL 1. 1. 0. 0.
BR 1. 1. 0. 0.
UN 0.339 0.339 0.418 0.418

Sequences

Field Description
UTR seq + 25 gggggcccgaccaccgcggggccgggacgcgATGGACGATTCCATTAATAATAGAT
UTR dot + 25 ..((.((((…….)))).))…….((((((….))))))……….
RS 1 seq AUCGUUCAUCCUAACUAAUAAGGACGGAAGUAAGCUUCAUGCUGAAGGAACGCGCU
RS 1 dot ….(((.((((……..)))).)))……(((((…)))))………
RS 2 seq AUCGUUUAUCCUGAAACGGACGGAAGUAAACCACCAAUGGUUGAAGAAACGCUCU
RS 2 dot .((((((……))))))………(((((….)))))………….
RS 3 seq AUCGUUUAUCCUGAAACGGACGGAAGUAAACCAUUUAAGGUUGAAGAAACGCUCU
RS 3 dot .((((((……))))))………((((……))))………….

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