Detected as a riboswitch by 1 out of 20 classifiers
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5HSAA036056 Similarity: 0.995 Similarity: 0.992 Similarity: 0.992
UTR: 5HSAA036056
Gene: EPDR1
MFE: -14.554
ENS: 0.731
Length: 44.
Predicted Ligands:
preQ_1 - 19/20
glutamine - 1/20

 RS: URS0000AB8C73_887898
MFE: -9.546
Ligand: preQ_1
Species: Lautropia mirabilis ATCC 51599 PreQ1 riboswitch
 RS: URS0000AB4DC1_362948
MFE: -4.776
Ligand: preQ_1
Species: Lactobacillus salivarius UCC118 PreQ1 riboswitch
 RS: URS0000D80EF9_1552123
MFE: -6.806
Ligand: preQ_1
Species: Listeria booriae PreQ1 riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA036056 URS0000AB8C73_887898 URS0000AB4DC1_362948 URS0000D80EF9_1552123
Length 44. 45. 45. 45.
Similarity - 0.995 0.992 0.992
Ensemble Norm 0.731 - - -
MFE -14.554 -9.546 -4.776 -6.806
Ligands - preQ_1 preQ_1 preQ_1
Gene EPDR1 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 0. 2.012 1.005
Length SE - 1. 1. 1.
Lev Distance - 6. 9. 10.
UBS 3. 3. 2. 3.
BS 0. 0. 0. 0.
ILL 1. 1. 1. 1.
ILR 1. 1. 1. 1.
H 1. 1. 1. 1.
BL 1. 1. 0. 1.
BR 0. 0. 0. 1.
UN 0.159 0.156 0.267 0.089

Sequences

Field Description
UTR seq + 25 uccccccucuuaaaacacgATGGTCCGGGACTGGGAGGGGCGCT
UTR dot + 25 …(((((((((…(.((……)))…)))))))))….
RS 1 seq GCCCCCGUGGUUCGAAAAACGCCCACGUUAAAAAACUAGGGAAGA
RS 1 dot …(((.(((((…..((((….))))….))))))))….
RS 2 seq UCCACACUGGUUCGUAAACAUCCCAGUUAAAAAAACUAGAAAGCA
RS 2 dot ……((((((….(((……)))…..))))))……
RS 3 seq GUUUCCGUGGUUCGAAACUAUCCCACGAUAAAAAACUAAGGAGUG
RS 3 dot ..((((.(((((……((((….))))…))))).))))..

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