Detected as a riboswitch by 2 out of 20 classifiers
arrow left to previous 5prime UTR page
5HSAA039195 Similarity: 0.987 Similarity: 0.986 Similarity: 0.986
UTR: 5HSAA039195
Gene: FANCA
MFE: -26.392
ENS: 0.724
Length: 67.
Predicted Ligands:
fluoride - 8/20
cobalamin - 7/20
unknown - 2/20
 RS: URS0000DA5B99_1701573
MFE: -17.164
Ligand: fluoride
Species: Paraburkholderia piptadeniae Fluoride riboswitch
 RS: URS0000C0999D_52689
MFE: -16.664
Ligand: cobalamin
Species: Acetobacterium bakii Cobalamin riboswitch
 RS: URS0000C66180_477641
MFE: -25.426
Ligand: cobalamin
Species: Modestobacter sp. 42H12-1 Cobalamin riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
arrow right to the next 5prime UTR page
heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA039195 URS0000DA5B99_1701573 URS0000C0999D_52689 URS0000C66180_477641
Length 67. 66. 67. 67.
Similarity - 0.987 0.986 0.986
Ensemble Norm 0.724 - - -
MFE -26.392 -17.164 -16.664 -25.426
Ligands - fluoride cobalamin cobalamin
Gene FANCA - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.005 2.001 3.001
Length SE - 1. 0. 0.
Lev Distance - 16. 18. 18.
UBS 6. 5. 7. 5.
BS 0. 0. 0. 0.
ILL 1. 1. 1. 1.
ILR 2. 2. 2. 2.
H 2. 2. 2. 2.
BL 2. 1. 2. 1.
BR 2. 1. 3. 1.
UN 0.134 0.061 0.104 0.164

Sequences

Field Description
UTR seq + 25 cgggcgcagggagccgccgccggggcuguaggcgccaaggccATGTCCGACTCGTGGGTCCCGAACT
UTR dot + 25 ..(((((..(.((((.(….).)))).)..)))))..(((((((…….)))))…))…..
RS 1 seq UCGAUUGACGGAGAUGGCAUUCCUCCCGUAACCGCCGGUUGGCCGGCUAAUGAUGCCUACGGUUCC
RS 1 dot .((((((.(((..((((……..))))..))).))))))((((((…….)))…)))…
RS 2 seq GGGAAUCCGGGUGAAAAUCCCGAACAGAUGCGCUACCGUAAUUGCCAACAGGCAAAAGCCGGGAACC
RS 2 dot (.(.(((((((…….))))….))).).)..((((..(((((….)))))..)).))…..
RS 3 seq AGGGAAGCCGGUGCGAGCCCGGCGCGGUCCCGCCACUGUGACCCCACCUCGGGGGAGCCAGACACCU
RS 3 dot .((((.(((((…….)))))….))))….((((..((((…..))))..)).))……

Back to Ensemble of 20 Table

Back to Ensemble of 1 Table