Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA057535 Similarity: 0.991 Similarity: 0.991 Similarity: 0.989
UTR: 5HSAA057535
Gene: KRTCAP2
MFE: -14.992
ENS: 0.998
Length: 51.
Predicted Ligands:
glutamine - 16/20
unknown - 3/20
fluoride - 1/20
 RS: URS0000C6A532_12908
MFE: -9.622
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C70E60_12908
MFE: -9.622
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000D68C5A_12908
MFE: -8.266
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA057535 URS0000C6A532_12908 URS0000C70E60_12908 URS0000D68C5A_12908
Length 51. 52. 52. 52.
Similarity - 0.991 0.991 0.989
Ensemble Norm 0.998 - - -
MFE -14.992 -9.622 -9.622 -8.266
Ligands - glutamine glutamine glutamine
Gene KRTCAP2 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 9. 9. 1.020
Length SE - 1. 1. 1.
Lev Distance - 8. 8. 13.
UBS 4. 2. 2. 4.
BS 0. 0. 0. 0.
ILL 1. 1. 1. 0.
ILR 1. 1. 1. 1.
H 1. 1. 1. 1.
BL 2. 0. 0. 2.
BR 1. 0. 0. 1.
UN 0.314 0.327 0.327 0.173

Sequences

Field Description
UTR seq + 25 agcaaguccgcgguaagcgcugacgcATGCGCATAGCTAACCGCACCCGGT
UTR dot + 25 ………(((((.(((..((.((….))))..))).)))))…….
RS 1 seq AUCGUUCAACUCUUUUAGAGUCGGAAGUAAGCGAAAGCUGAAGGAACGCAAC
RS 1 dot ……….((((((((..(((……..)))…))))))))…….
RS 2 seq AUCGUUCAACUCUUUUAGAGUCGGAAGUAAGCGAAAGCUGAAGGAACGCAAU
RS 2 dot ……….((((((((..(((……..)))…))))))))…….
RS 3 seq GUCGUUCAUCCUUUUUUUAUGAGGACGCAAAAGUUUACUGAAGGAACGGGAA
RS 3 dot ……..(((((((((((.(.((((……)))).))))))))..)))).

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