Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA059401 Similarity: 0.991 Similarity: 0.990 Similarity: 0.990
UTR: 5HSAA059401
Gene: LMLN_0
MFE: -10.299
ENS: 0.959
Length: 45.
Predicted Ligands:
preQ_1 - 12/20
SAM - 7/20
Ni/Co - 1/20
 RS: URS0000AB8C73_887898
MFE: -9.546
Ligand: preQ_1
Species: Lautropia mirabilis ATCC 51599 PreQ1 riboswitch
 RS: URS0000C49209_407035
MFE: -6.899
Ligand: Ni/Co
Species: Salinicoccus halodurans PreQ1 riboswitch
 RS: URS0000DAF0C0_505341
MFE: -5.883
Ligand: preQ_1
Species: Gallibacterium salpingitidis PreQ1 riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA059401 URS0000AB8C73_887898 URS0000C49209_407035 URS0000DAF0C0_505341
Length 45. 45. 45. 45.
Similarity - 0.991 0.990 0.990
Ensemble Norm 0.959 - - -
MFE -10.299 -9.546 -6.899 -5.883
Ligands - preQ_1 Ni/Co preQ_1
Gene LMLN - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3. 4.024 2.008
Length SE - 0. 0. 0.
Lev Distance - 11. 12. 13.
UBS 4. 3. 3. 4.
BS 0. 0. 0. 0.
ILL 1. 1. 1. 1.
ILR 1. 1. 0. 1.
H 1. 1. 1. 1.
BL 2. 1. 1. 1.
BR 1. 0. 0. 2.
UN 0.156 0.156 0.311 0.067

Sequences

Field Description
UTR seq + 25 gcagaggcgucacgcacuccATGGTAACGACGCTCGGCCCGAAGA
UTR dot + 25 ((.((.(((((….(((….)))…))))))).))…….
RS 1 seq GCCCCCGUGGUUCGAAAAACGCCCACGUUAAAAAACUAGGGAAGA
RS 1 dot …(((.(((((…..((((….))))….))))))))….
RS 2 seq UUAUCACAGGUUCGAGAUCCUCCCUGUAUAAAAAACUAAGGAGAU
RS 2 dot ((((.(((((…(((…))))))))))))…………..
RS 3 seq AUUGUCGUGGUUCGCAAACCUCCCACGUUAAAAAACUAGGAACAU
RS 3 dot ..((((.(((((….(((…….)))….))))).)).)).

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