Detected as a riboswitch by 12 out of 20 classifiers
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5HSAA060910 Similarity: 0.987 Similarity: 0.987 Similarity: 0.987
UTR: 5HSAA060910
Gene: LSM3
MFE: -7.892
ENS: 0.833
Length: 49.
Predicted Ligands:
preQ_1 - 8/20
glutamine - 7/20
SAM - 3/20
 RS: URS0000C0958F_12908
MFE: -8.488
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000D99644_574375
MFE: -11.087
Ligand: SAM
Species: Bacillus gaemokensis SAM riboswitch (S box leader)
 RS: URS0000D905FD_1078083
MFE: -5.009
Ligand: preQ_1
Species: Staphylococcus sp. HGB0015 PreQ1 riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA060910 URS0000C0958F_12908 URS0000D99644_574375 URS0000D905FD_1078083
Length 49. 50. 48. 48.
Similarity - 0.987 0.987 0.987
Ensemble Norm 0.833 - - -
MFE -7.892 -8.488 -11.087 -5.009
Ligands - glutamine SAM preQ_1
Gene LSM3 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.021 4.012 4.014
Length SE - 1. 1. 1.
Lev Distance - 15. 15. 15.
UBS 3. 4. 2. 2.
BS 0. 0. 0. 0.
ILL 2. 2. 1. 1.
ILR 0. 1. 1. 1.
H 1. 1. 1. 1.
BL 0. 1. 0. 0.
BR 1. 1. 0. 0.
UN 0.265 0.120 0.375 0.146

Sequences

Field Description
UTR seq + 25 gggaaagggcgcaggguuugaaacATGGCGGACGACGTAGACCAGCAAC
UTR dot + 25 ……….((..(((((……..(((…..)))))))).))…
RS 1 seq AUCGUUCAACCCUUAGGGUCGGAAGUAAGCUAGAGCUGAAGGAACGCGCA
RS 1 dot ..((((….(((..((.((…………)).))..)))))))….
RS 2 seq UACUUAUCCAGAGAGGUAGAGGGACUGGCCCUAUGAAACCUCAGCAGC
RS 2 dot …………(((((..((((…..))))…..)))))……
RS 3 seq AUUAAAGAGGUUCCUAGCUUCCAACCCUCUAUAAAAAACUAGACACCU
RS 3 dot …….((((..((((…………………))))..))))

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