Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA064769 Similarity: 0.991 Similarity: 0.991 Similarity: 0.991
UTR: 5HSAA064769
Gene: MED19
MFE: -7.592
ENS: 0.991
Length: 47.
Predicted Ligands:
preQ_1 - 13/20
glutamine - 5/20
SAM - 1/20
 RS: URS0000D6941F_12908
MFE: -9.766
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000D68BEE_12908
MFE: -9.766
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000D6B5F5_12908
MFE: -8.966
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA064769 URS0000D6941F_12908 URS0000D68BEE_12908 URS0000D6B5F5_12908
Length 47. 47. 47. 47.
Similarity - 0.991 0.991 0.991
Ensemble Norm 0.991 - - -
MFE -7.592 -9.766 -9.766 -8.966
Ligands - glutamine glutamine glutamine
Gene MED19 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 2.004 2.004 2.004
Length SE - 0. 0. 0.
Lev Distance - 12. 12. 12.
UBS 3. 3. 3. 3.
BS 0. 0. 0. 0.
ILL 1. 0. 0. 0.
ILR 1. 1. 1. 1.
H 1. 1. 1. 1.
BL 1. 1. 1. 1.
BR 0. 1. 1. 1.
UN 0.234 0.170 0.170 0.170

Sequences

Field Description
UTR seq + 25 cagcgccggggcggaggguacgATGAAAATTACCAACGGCAGACACG
UTR dot + 25 ….((((..(.(……………….))..))))…….
RS 1 seq AUCGUUCAUCCCGAAAGGGACGCAAAAGCCGACUGAAGGAACGGGUU
RS 1 dot .((.((((((((….))))………….)))).))…….
RS 2 seq AUCGUUCAUCCCGUAAGGGACGCAAAAGCCGACUGAAGGAACGGGAU
RS 2 dot .((.((((((((….))))………….)))).))…….
RS 3 seq AUCGUUCAUCCCAUAAGGGACGCAAAAGCCGACUGAAGGAACGGGAU
RS 3 dot .((.((((((((….))))………….)))).))…….

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