Detected as a riboswitch by 1 out of 20 classifiers
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5HSAA067399 Similarity: 0.989 Similarity: 0.988 Similarity: 0.988
UTR: 5HSAA067399
Gene: MRPL21
MFE: -17.292
ENS: 0.789
Length: 50.
Predicted Ligands:
glutamine - 12/20
unknown - 4/20
SAM - 4/20
 RS: URS0000D68FF7_981327
MFE: -11.818
Ligand: unknown
Species: Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512 nhaA-I RNA
 RS: URS0000C83A52_12908
MFE: -10.525
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C2DF08_12908
MFE: -11.566
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA067399 URS0000D68FF7_981327 URS0000C83A52_12908 URS0000C2DF08_12908
Length 50. 51. 51. 51.
Similarity - 0.989 0.988 0.988
Ensemble Norm 0.789 - - -
MFE -17.292 -11.818 -10.525 -11.566
Ligands - unknown glutamine glutamine
Gene MRPL21 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.001 7.033 7.033
Length SE - 1. 1. 1.
Lev Distance - 13. 13. 13.
UBS 4. 4. 4. 4.
BS 0. 0. 0. 0.
ILL 2. 3. 3. 3.
ILR 0. 0. 1. 1.
H 1. 1. 1. 1.
BL 1. 0. 0. 0.
BR 3. 2. 1. 1.
UN 0.220 0.196 0.039 0.039

Sequences

Field Description
UTR seq + 25 uccguuuccggccgaggcugcggccATGATCGTCACGGGGCAGTATGGCA
UTR dot + 25 ……….((((..(((((..((.(((…))).)).))))).)))).
RS 1 seq GGGUGUCUAGCGUAGCUAAGACAGGUAUUCGUUAUAGUCGGGCCGCUAUAA
RS 1 dot …….(((((..(((..(((..(((…..))).))).))))))))…
RS 2 seq AUCGUUCAACCCUUUUGGGUCGGAAGUAAGCUUCAGCUGAAGGAACGCGGA
RS 2 dot .((((…..(((((..(((..((((….)))).))))))))…)))).
RS 3 seq AUCGUUCAACCCUUUUGGGUCGGAAGUAAGCUUCAGCUGAAGGAACGCGAA
RS 3 dot .((((…..(((((..(((..((((….)))).))))))))…)))).

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