Detected as a riboswitch by 20 out of 20 classifiers
arrow left to previous 5prime UTR page
5HSAA067584 Similarity: 0.981 Similarity: 0.981 Similarity: 0.980
UTR: 5HSAA067584
Gene: MRPS10_0
MFE: -32.942
ENS: 0.990
Length: 86.
Predicted Ligands:
glycine - 9/20
cyclic-di-GMP - 6/20
zmp-ztp - 3/20
 RS: URS0000D93091_1915004
MFE: -20.426
Ligand: glycine
Species: Streptococcus sp. 'caviae' Glycine riboswitch
 RS: URS0000D92E47_699248
MFE: -20.426
Ligand: glycine
Species: Streptococcus ratti FA-1 = DSM 20564 Glycine riboswitch
 RS: URS0000ABBA00_1003200
MFE: -29.617
Ligand: glycine
Species: Achromobacter xylosoxidans AXX-A Glycine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
arrow right to the next 5prime UTR page
heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA067584 URS0000D93091_1915004 URS0000D92E47_699248 URS0000ABBA00_1003200
Length 86. 86. 86. 87.
Similarity - 0.981 0.981 0.980
Ensemble Norm 0.990 - - -
MFE -32.942 -20.426 -20.426 -29.617
Ligands - glycine glycine glycine
Gene MRPS10 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 4.001 4.001 10.
Length SE - 0. 0. 1.
Lev Distance - 24. 24. 23.
UBS 4. 5. 5. 6.
BS 0. 0. 0. 0.
ILL 3. 4. 4. 3.
ILR 1. 2. 2. 3.
H 1. 1. 1. 1.
BL 0. 0. 0. 1.
BR 0. 1. 1. 1.
UN 0.186 0.163 0.163 0.184

Sequences

Field Description
UTR seq + 25 cuauggucugaggacgccgcuguaaccccggaagcaauccugagaggucgggaccggcaagATGGCGGCGCGGACAGCGTTCGGTG
UTR dot + 25 …..(((((….(((((((((….((((……((((((….))))))))))….))))))))))))))………..
RS 1 seq UGACGGACUUCUGGAGAGACCUUUUUAGGCGCCGAAGGGGCAAGGCAGAUGCUCAAUCUCUCAGGCAAAAGGACAGAAGAUAGGCA
RS 1 dot …….((((((……((((((…..(((..(((((…(((….)))…)))))..))))))))).))))))…….
RS 2 seq UGACGGACUUCUGGAGAGACCUUUUUAGGCGCCGAAGGGGCAAGGCAGAUGCUCAAUCUCUCAGGCAAAAGGACAGAAGAUAAGCA
RS 2 dot …….((((((……((((((…..(((..(((((…(((….)))…)))))..))))))))).))))))…….
RS 3 seq CAAUCUGGAGAGAGGCGCCUGGCGCCCACCGAAGGGGAACCCGCGCCGCCGCGCCCGGGUGAAGCUCUCAGGUACAGAGACAGAUGG
RS 3 dot ..(((((.((((…((((((((((….((..((….))..))…..))))).)))))…)))))))))…………..

Back to Ensemble of 20 Table

Back to Ensemble of 1 Table