Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA067619 Similarity: 0.990 Similarity: 0.987 Similarity: 0.987
UTR: 5HSAA067619
Gene: MRPS17
MFE: -4.080
ENS: 0.981
Length: 42.
Predicted Ligands:
SAM - 14/20
preQ_1 - 4/20
zmp-ztp - 1/20
 RS: URS00023316D7_471853
MFE: -15.636
Ligand: zmp-ztp
Species: Beutenbergia cavernae DSM 12333 ZMP/ZTP riboswitch
 RS: URS0000C4588A_46224
MFE: -8.448
Ligand: preQ_1
Species: Bacillus sporothermodurans PreQ1 riboswitch
 RS: URS0000C25FF0_1476857
MFE: -8.448
Ligand: preQ_1
Species: Bacillus sp. B-jedd PreQ1 riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA067619 URS00023316D7_471853 URS0000C4588A_46224 URS0000C25FF0_1476857
Length 42. 41. 43. 43.
Similarity - 0.990 0.987 0.987
Ensemble Norm 0.981 - - -
MFE -4.080 -15.636 -8.448 -8.448
Ligands - zmp-ztp preQ_1 preQ_1
Gene MRPS17 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 0. 3.006 3.006
Length SE - 1. 1. 1.
Lev Distance - 13. 15. 15.
UBS 3. 3. 2. 2.
BS 0. 0. 0. 0.
ILL 1. 1. 0. 0.
ILR 1. 1. 0. 0.
H 2. 2. 2. 2.
BL 0. 0. 0. 0.
BR 0. 0. 0. 0.
UN 0.214 0.195 0.140 0.140

Sequences

Field Description
UTR seq + 25 gugaccaaagccacguaATGTCCGTAGTTCGCTCATCCGTCC
UTR dot + 25 (((……..)))…(((..((…..))..)))……
RS 1 seq GUCGCGACUGGCGCCGAGGUGGAUCACCACCGGGGAGCGAC
RS 1 dot ..(((…..)))((..(((((….)))))..))……
RS 2 seq GCGGUAGAGGUUCUAGCUACCCUCUUUAAAAAACUAAGGAAAA
RS 2 dot ..(((((………))))).((((((……))))))…
RS 3 seq GCGGUAGAGGUUCUAGCUACCCUCUUUAAAAAACUAAGGAAAC
RS 3 dot ..(((((………))))).((((((……))))))…

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