Detected as a riboswitch by 10 out of 20 classifiers
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5HSAA068706 Similarity: 0.990 Similarity: 0.988 Similarity: 0.988
UTR: 5HSAA068706
Gene: MTRR
MFE: -13.082
ENS: 0.869
Length: 55.
Predicted Ligands:
glutamine - 14/20
unknown - 5/20
homocysteine - 1/20
 RS: URS000080E144_305
MFE: -18.538
Ligand: homocysteine
Species: S-ADENOSYLHOMOCYSTEINE RIBOSWITCH from Ralstonia solanacearum (PDB 3NPQ, chain B)
 RS: URS0000C365A9_12908
MFE: -7.766
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C473B6_12908
MFE: -8.866
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA068706 URS000080E144_305 URS0000C365A9_12908 URS0000C473B6_12908
Length 55. 54. 56. 56.
Similarity - 0.990 0.988 0.988
Ensemble Norm 0.869 - - -
MFE -13.082 -18.538 -7.766 -8.866
Ligands - homocysteine glutamine glutamine
Gene MTRR - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 8. 5.006 5.006
Length SE - 1. 1. 1.
Lev Distance - 10. 13. 13.
UBS 4. 5. 5. 5.
BS 0. 0. 0. 0.
ILL 2. 1. 1. 1.
ILR 1. 0. 2. 2.
H 1. 1. 1. 1.
BL 1. 2. 2. 2.
BR 1. 3. 2. 2.
UN 0.218 0.222 0.143 0.143

Sequences

Field Description
UTR seq + 25 ggagcuuucuauugguccuggguaccgagcATGAGGAGGTTTCTGTTACTATATG
UTR dot + 25 ((((((((((..((.((..((…)))).))..))))))))))…………
RS 1 seq GGACGAGGAGCGCUGCAAGCGAGAGCCCAGGCUCGUCCGUUCAAACGGCGCUCA
RS 1 dot ((((((.((((.(((…((….)).))))))).)).))))…………
RS 2 seq AUCGUUCAUUUUGAAUAAUUCAAAACGGAAGUAAACGAAAGUUGAAGGAACGCAAA
RS 2 dot .((.(((((((((..((.(((……))).))..)))))..)))).))…….
RS 3 seq AUCGUUCAUUUUGAAUAAUUCAAAACGGAAGUAGACGAAAGUUGAAGGAACGCAUG
RS 3 dot .((.(((((((((..((.(((……))).))..)))))..)))).))…….

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