Detected as a riboswitch by 16 out of 20 classifiers
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5HSAA071401 Similarity: 0.988 Similarity: 0.988 Similarity: 0.987
UTR: 5HSAA071401
Gene: NECAP1_1
MFE: -11.781
ENS: 0.928
Length: 44.
Predicted Ligands:
SAM - 15/20
preQ_1 - 5/20

 RS: URS00021EDF51_12908
MFE: -11.082
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
 RS: URS00021EDF76_12908
MFE: -11.082
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
 RS: URS00021EE0C4_12908
MFE: -13.038
Ligand: SAM
Species: unclassified sequences SAM-SAH-Weickhmann-2018 RNA
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA071401 URS00021EDF51_12908 URS00021EDF76_12908 URS00021EE0C4_12908
Length 44. 44. 44. 45.
Similarity - 0.988 0.988 0.987
Ensemble Norm 0.928 - - -
MFE -11.781 -11.082 -11.082 -13.038
Ligands - SAM SAM SAM
Gene NECAP1 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 6.013 6.013 7.004
Length SE - 0. 0. 1.
Lev Distance - 15. 15. 14.
UBS 4. 3. 3. 3.
BS 0. 0. 0. 0.
ILL 1. 1. 1. 1.
ILR 0. 1. 1. 1.
H 1. 1. 1. 1.
BL 1. 1. 1. 0.
BR 3. 1. 1. 1.
UN 0.250 0.364 0.364 0.311

Sequences

Field Description
UTR seq + 25 cgccgacagcggacccaagATGGCGACCGAGTTGGAGTACGAGT
UTR dot + 25 ..(((((..(((.((((…))).).))).)))))………
RS 1 seq GUGCGGCAACGGCUUCCUGAAGCGGCACUAAACACAUCGGAGCA
RS 1 dot ((((.((..(((….)))..)).))))…………….
RS 2 seq GUGCGGCAACGGCUUCCUGAAGCGGCACUAAAUACAUCGGAGCA
RS 2 dot ((((.((..(((….)))..)).))))…………….
RS 3 seq GUAGCUGCAACGGCUUCCUGGCGCAGCUUGCAUUUAAUUGGAGCA
RS 3 dot ((((((((..(((….)))..)))))).))…………..

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