Detected as a riboswitch by 12 out of 20 classifiers
arrow left to previous 5prime UTR page
5HSAA074765 Similarity: 0.993 Similarity: 0.968 Similarity: 0.959
UTR: 5HSAA074765
Gene: OCEL1
MFE: -6.476
ENS: 0.878
Length: 27.
Predicted Ligands:
SAM - 11/20
preQ_1 - 4/20
unknown - 2/20
 RS: URS0001A24B50_1907202
MFE: -10.
Ligand: unknown
Species: Chains: A,C,F,I,M,O from Roseobacter sp. (PDB 6YLB, chain F)
 RS: URS0000ABD446_1313296
MFE: -4.722
Ligand: preQ_1
Species: Paenibacillus uliginis N3/975 PreQ1 riboswitch
 RS: URS000080E32E_119072
MFE: -6.098
Ligand: preQ_1
Species: PREQ1 RIBOSWITCH from Caldanaerobacter subterraneus subsp. tengcongensis (PDB 6VUH, chain A)
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
arrow right to the next 5prime UTR page
heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA074765 URS0001A24B50_1907202 URS0000ABD446_1313296 URS000080E32E_119072
Length 27. 26. 32. 33.
Similarity - 0.993 0.968 0.959
Ensemble Norm 0.878 - - -
MFE -6.476 -10. -4.722 -6.098
Ligands - unknown preQ_1 preQ_1
Gene OCEL1 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 0.049 3.015 3.029
Length SE - 1. 25. 36.
Lev Distance - 8. 18. 19.
UBS 2. 2. 1. 1.
BS 0. 0. 0. 0.
ILL 1. 1. 0. 0.
ILR 1. 1. 0. 0.
H 1. 1. 1. 1.
BL 0. 0. 0. 0.
BR 0. 0. 0. 0.
UN 0.222 0. 0.344 0.394

Sequences

Field Description
UTR seq + 25 aaATGCACAACCCGGACGGAAGTGCCT
UTR dot + 25 ….((((..((…..))..))))..
RS 1 seq GGUCACAACGGCUUCCUGGCGUGACC
RS 1 dot ((((((..(((….)))..))))))
RS 2 seq AGAGGUUCGUGAACUCCCUCUAUAAAAAACUA
RS 2 dot (((((………..)))))………..
RS 3 seq CUGGGUCGCAGUAACCCCAGUUAACAAAACAAG
RS 3 dot (((((……….)))))………….

Back to Ensemble of 20 Table

Back to Ensemble of 1 Table