Detected as a riboswitch by 5 out of 20 classifiers
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5HSAA074976 Similarity: 0.985 Similarity: 0.985 Similarity: 0.985
UTR: 5HSAA074976
Gene: OGDHL
MFE: -18.817
ENS: 0.816
Length: 60.
Predicted Ligands:
fluoride - 11/20
glutamine - 4/20
SAM - 4/20
 RS: URS0000DB43F4_225345
MFE: -8.995
Ligand: fluoride
Species: Clostridium chromoreductans Fluoride riboswitch
 RS: URS0000C3E9A7_12908
MFE: -8.188
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C22601_12908
MFE: -8.688
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA074976 URS0000DB43F4_225345 URS0000C3E9A7_12908 URS0000C22601_12908
Length 60. 60. 59. 59.
Similarity - 0.985 0.985 0.985
Ensemble Norm 0.816 - - -
MFE -18.817 -8.995 -8.188 -8.688
Ligands - fluoride glutamine glutamine
Gene OGDHL - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 9. 3.003 3.003
Length SE - 0. 1. 1.
Lev Distance - 17. 19. 19.
UBS 3. 4. 3. 3.
BS 0. 0. 0. 0.
ILL 0. 2. 1. 1.
ILR 0. 1. 1. 1.
H 2. 1. 1. 1.
BL 1. 0. 1. 1.
BR 1. 0. 1. 1.
UN 0.050 0.033 0.102 0.102

Sequences

Field Description
UTR seq + 25 gcgcgcccgugggcggcugcgucacgugacccagaATGTTCATCAACGATGTGGAGCAGT
UTR dot + 25 …((((….))))(((((.((((((…………………)))))).)))))
RS 1 seq UAUAUUUUAGGUGAUGGAGUUCGCCUUUAACUGCGUAAUGCUAAUGACUCCUACAAAAUA
RS 1 dot ..((((((..(((..(((((((((……..)))……….)))))))))))))))
RS 2 seq AUCGUUCAUCGUUAUUUGGGGACGGAAGUAGGUAAAAAAUCAAACCGAAGGAACGCAUC
RS 2 dot ..(((((.(((…(((((………………..))))).)))..)))))….
RS 3 seq AUCGUUCAUCCUUGUUUGGGGACGGAAGUAGGUAAAAAAUCAAACCGAAGGAACGCAUC
RS 3 dot ..(((((.((…((((((………………..)))))).))..)))))….

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