Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA084405 Similarity: 0.992 Similarity: 0.990 Similarity: 0.990
UTR: 5HSAA084405
Gene: PRIM1_0
MFE: -13.844
ENS: 0.978
Length: 50.
Predicted Ligands:
glutamine - 14/20
unknown - 5/20
fluoride - 1/20
 RS: URS0000C6EC44_12908
MFE: -10.138
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C4DA00_12908
MFE: -8.935
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C056D2_12908
MFE: -8.935
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA084405 URS0000C6EC44_12908 URS0000C4DA00_12908 URS0000C056D2_12908
Length 50. 50. 50. 50.
Similarity - 0.992 0.990 0.990
Ensemble Norm 0.978 - - -
MFE -13.844 -10.138 -8.935 -8.935
Ligands - glutamine glutamine glutamine
Gene PRIM1 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 4.010 6.010 6.010
Length SE - 0. 0. 0.
Lev Distance - 10. 11. 11.
UBS 5. 4. 5. 5.
BS 0. 0. 0. 0.
ILL 1. 2. 2. 2.
ILR 1. 1. 0. 0.
H 1. 1. 1. 1.
BL 2. 1. 2. 2.
BR 1. 0. 3. 3.
UN 0.220 0.120 0.120 0.120

Sequences

Field Description
UTR seq + 25 cuuaccguggcgaguuccgcgcucaATGGAGACGTTTGACCCCACCGAGC
UTR dot + 25 ……((((.(.(((..((((((….))).)))..))))))))…..
RS 1 seq CUCGUUCAUCCUAAAAGGACGGAAGUAGGCUUUUGCCGAAGGAACGCACC
RS 1 dot ..(((…((((….((.((((((….))))))))..)))))))….
RS 2 seq UACGUUCAACCUUAUGGUCGGAAGUAAGCUUGUAGCUGAAGGAACGCAAA
RS 2 dot ..((((…((((..(((.(.(((….))).).))).))))))))….
RS 3 seq UACGUUCAACCUUAUGGUCGGAAGUAAGCUUGUAGCUGAAGGAACGCGAU
RS 3 dot ..((((…((((..(((.(.(((….))).).))).))))))))….

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