Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA085666 Similarity: 0.992 Similarity: 0.992 Similarity: 0.992
UTR: 5HSAA085666
Gene: PSMD6
MFE: -11.672
ENS: 0.988
Length: 50.
Predicted Ligands:
glutamine - 12/20
SAM - 6/20
unknown - 2/20
 RS: URS0000C56388_12908
MFE: -11.443
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C304BC_12908
MFE: -10.368
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C1124E_12908
MFE: -9.873
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA085666 URS0000C56388_12908 URS0000C304BC_12908 URS0000C1124E_12908
Length 50. 51. 50. 50.
Similarity - 0.992 0.992 0.992
Ensemble Norm 0.988 - - -
MFE -11.672 -11.443 -10.368 -9.873
Ligands - glutamine glutamine glutamine
Gene PSMD6 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 1.004 1. 1.
Length SE - 1. 0. 0.
Lev Distance - 9. 11. 11.
UBS 4. 4. 4. 4.
BS 0. 0. 0. 0.
ILL 0. 0. 0. 0.
ILR 0. 0. 0. 0.
H 2. 2. 2. 2.
BL 2. 2. 2. 2.
BR 1. 2. 2. 2.
UN 0.220 0.157 0.220 0.240

Sequences

Field Description
UTR seq + 25 gucagccgcuguccccuuagccgcgATGAATGAGAGTAACGACTCGACAA
UTR dot + 25 (((.((.((((……)))).)))))……((((….))))…..
RS 1 seq UACGUUCAUCCUACAAAAGGACGGAAGUAGCACUAUGCGAAGGAACGCACU
RS 1 dot (((.(((.((((…..)))).))).)))……((((……))))..
RS 2 seq CACGUUCAUCCUAUUAUAGGACGGAAGUAGCAAUAGCGAAGGAACGCACU
RS 2 dot .((.(((.(((((…))))).))).))…….(((……)))…
RS 3 seq CACGUUCAUCCUAUCAAGGACGGAAGUAGCAUAACGCGAAGGAACGCACC
RS 3 dot .((.(((.((((….)))).))).))……..(((……)))…

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