Detected as a riboswitch by 7 out of 20 classifiers
arrow left to previous 5prime UTR page
5HSAA086848 Similarity: 0.988 Similarity: 0.988 Similarity: 0.988
UTR: 5HSAA086848
Gene: PUS10_0
MFE: -13.826
ENS: 0.839
Length: 70.
Predicted Ligands:
fluoride - 20/20 - 20/20


 RS: URS0000BE9A33_12908
MFE: -14.029
Ligand: fluoride
Species: unclassified sequences Fluoride riboswitch
 RS: URS0000BE7688_483214
MFE: -13.979
Ligand: fluoride
Species: Methanobrevibacter smithii DSM 2375 Fluoride riboswitch
 RS: URS0000BE26D0_411473
MFE: -14.692
Ligand: fluoride
Species: Ruminococcus callidus ATCC 27760 Fluoride riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
arrow right to the next 5prime UTR page
heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA086848 URS0000BE9A33_12908 URS0000BE7688_483214 URS0000BE26D0_411473
Length 70. 71. 71. 71.
Similarity - 0.988 0.988 0.988
Ensemble Norm 0.839 - - -
MFE -13.826 -14.029 -13.979 -14.692
Ligands - fluoride fluoride fluoride
Gene PUS10 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 2.002 2.002 6.002
Length SE - 1. 1. 1.
Lev Distance - 14. 15. 14.
UBS 3. 3. 3. 4.
BS 0. 0. 0. 0.
ILL 0. 0. 0. 0.
ILR 0. 0. 0. 0.
H 2. 3. 3. 2.
BL 0. 0. 0. 2.
BR 1. 0. 0. 2.
UN 0.429 0.380 0.380 0.380

Sequences

Field Description
UTR seq + 25 aaaucucaggcuccggcgucuggggagaaguuauaauuauucaauATGTTCCCACTGACTGAGGAAAACA
UTR dot + 25 …((((((((……))))))))…………………..((((((…..)).))))….
RS 1 seq UAAUAACUUGGUGAUGGGGUUCACCAGAAACUUAUUUUCAAACCGCAAUUGCUGAUAACUCCUAGGUUAUA
RS 1 dot …….(((((((……)))))))……………..((….))..((((((….)))))).
RS 2 seq UAAUAACUUGGUGAUGGGGUUCACCAGAAACUUAUUUUCAAACCGCAAUUGCUGAUAACUCCUAUGUUAUA
RS 2 dot …….(((((((……)))))))……………..((….))..(((((……))))).
RS 3 seq GUUUCCUUAGGGAAUGAUGUUCUCCCUUGGGAUUCCAAAACCGCUUGAGUGCUGAUGACGUCUGCUUUUUA
RS 3 dot …((((.(((((………))))).))))………………((.(((…))).))……

Back to Ensemble of 20 Table

Back to Ensemble of 1 Table