Detected as a riboswitch by 1 out of 20 classifiers
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5HSAA089294 Similarity: 0.956 Similarity: 0.956 Similarity: 0.956
UTR: 5HSAA089294
Gene: RBM19_0
MFE: -54.069
ENS: 0.753
Length: 169.
Predicted Ligands:
TPP - 13/20
Mg2+ - 3/20
lysine - 2/20
 RS: URS0000AB6F14_256318
MFE: -47.564
Ligand: Mg2+
Species: metagenome sequence M-box riboswitch (ykoK leader)
 RS: URS0000C2DB8C_1182544
MFE: -49.911
Ligand: TPP
Species: Cladophialophora yegresii CBS 114405 TPP riboswitch (THI element)
 RS: URS0000ABB604_336722
MFE: -62.541
Ligand: Ni/Co
Species: Mycosphaerella graminicola IPO323 TPP riboswitch (THI element)
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA089294 URS0000AB6F14_256318 URS0000C2DB8C_1182544 URS0000ABB604_336722
Length 169. 169. 169. 171.
Similarity - 0.956 0.956 0.956
Ensemble Norm 0.753 - - -
MFE -54.069 -47.564 -49.911 -62.541
Ligands - Mg2+ TPP Ni/Co
Gene RBM19 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 7.004 15.001 10.002
Length SE - 0. 0. 4.
Lev Distance - 55. 51. 48.
UBS 12. 12. 11. 13.
BS 0. 0. 2. 0.
ILL 2. 4. 3. 2.
ILR 3. 4. 3. 5.
H 3. 3. 2. 3.
BL 4. 3. 6. 3.
BR 6. 5. 4. 4.
UN 0.124 0.189 0.101 0.076

Sequences

Field Description
UTR seq + 25 cuuccggacaggucaggccaaggucucagccacgugacuguguuccggcucgguaaagauggcggcgcccagggcgguagcgugaaacuugguggaagacgcugaccagucguguuggaaucaaaacagcggggacccugcgccATGTCGCGACTGATCGTGAAGAATC
UTR dot + 25 .((((((((.((((((((((((……..(((((.(((((.((..((((((.((….)).))).))).)).))))).)))))…))))))……..)))))).)))….)))))……..(((((…)))))……((((((….))))))……
RS 1 seq AAUAAAGCUUGUUAGGUGAGGUUACUGGUUGAACAGAGGCUGCUGCCCGGAAAUGUCGAAAGACACCAAUGGGUAGAGCAGGCGUAGUCGGAUUAAGGCUUCGCAUAAGGCAGCUUUCCGGAAUCCGGAAUAAGUCAACCUGAACUAAAACUCUACGAGGAGCUUCAUG
RS 1 dot …(((((((.(((.((((((((..(((((..((…(.((((((((((….((((….))))….)))))..))))).)…))..))))).)))))))).))).).))))))((((…))))………………….((((….))))…….
RS 2 seq GCGCAGCACUACGGGCGCUUGUGUCAGUCCGUUUCCCCUGCCUCAUCCAACUGCUUCUUCUCGAAGUAGAGAUGAGCGGAUCCGGAAUGCCGACAACACAAUGCUGAGAAUGUACCGUCAAAACUCGAUCAAGUUAAUGCUUGCGUGGGAAACGUGCUGCCAACCUCCC
RS 2 dot (.(((((((.(((((((.((((((..(((.((((((.(((.((((((…(((((((…..))))))).)))))))))….)))).)).))).)))))))))……….))))…..((((..(((((….)))))..))))….))))))))……..
RS 3 seq UCGAGCAUGAGCCGGUGCUUGGCCCUUCUCGAGUAUGCUCGUGCCAUCUGCUGUCCUUUUCGAAGAUAUUGCAUGUGCAUGAACAUUUCUGGAGAAGGGCCUCGCUGAGAUCACACGGCUCGAACUUGAACCAGAUAAUGCUGGCGAUAAAGAAUCAUGCUCUUCCCCUAC
RS 3 dot (((((..(((((((((((((((((((((((.((.(((.((((((((..(((((((………))))..))))).)))))).)))..)).))))))))))…..)))..))).)))))))..))))).((((……))))…..((((…….))))…….

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