Detected as a riboswitch by 19 out of 20 classifiers
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5HSAA090071 Similarity: 0.987 Similarity: 0.986 Similarity: 0.985
UTR: 5HSAA090071
Gene: RELL1
MFE: -13.119
ENS: 0.942
Length: 53.
Predicted Ligands:
unknown - 17/20
FMN - 2/20
SAM - 1/20
 RS: URS000080DEC9_32630
MFE: -15.180
Ligand: SAM
Species: SMK box (SAM-III) Riboswitch from None (PDB 3E5C, chain A)
 RS: URS0000D6ABFA_1144317
MFE: -19.793
Ligand: unknown
Species: Acidovorax sp. CF316 nhaA-I RNA
 RS: URS0000D66C08_12908
MFE: -17.529
Ligand: unknown
Species: unclassified sequences nhaA-I RNA
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA090071 URS000080DEC9_32630 URS0000D6ABFA_1144317 URS0000D66C08_12908
Length 53. 53. 53. 52.
Similarity - 0.987 0.986 0.985
Ensemble Norm 0.942 - - -
MFE -13.119 -15.180 -19.793 -17.529
Ligands - SAM unknown unknown
Gene RELL1 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.013 3.013 3.012
Length SE - 0. 0. 1.
Lev Distance - 17. 18. 18.
UBS 3. 4. 4. 4.
BS 0. 0. 0. 0.
ILL 0. 0. 0. 0.
ILR 0. 0. 0. 1.
H 2. 3. 2. 2.
BL 1. 1. 2. 2.
BR 0. 1. 1. 0.
UN 0.321 0.208 0.208 0.212

Sequences

Field Description
UTR seq + 25 ugcaaacuagaaacuucuguugauuucgATGGCTCCGCGGGCACTCCCGGGGT
UTR dot + 25 …………….((((((….))))))(((((.((…..))))))).
RS 1 seq GUUCCCGAAAGGAUGGCGGAAACGCCAGAUGCCUUGUAACCGAAAGGGGGAAU
RS 1 dot ….((….)).(((((….)))))..(.((((……..)))).)….
RS 2 seq GGGUGUACGCGCUACAGGGGCGCGGCAGGUUCAGCGUCGGUCGGGCCGCCACG
RS 2 dot …….((((((…..))))))((.(((((.((….)).)))))))….
RS 3 seq GGGUGUUCGCUGCGUGGUGCAGCGGCAGGUUAGCGAUGGUCGGGCCGCCACG
RS 3 dot …….((((((…..))))))((.((((.((….))..))))))….

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