Detected as a riboswitch by 20 out of 20 classifiers
arrow left to previous 5prime UTR page
5HSAA092644 Similarity: 0.984 Similarity: 0.984 Similarity: 0.984
UTR: 5HSAA092644
Gene: RPL9
MFE: -19.430
ENS: 0.983
Length: 84.
Predicted Ligands:
cyclic-di-GMP - 15/20
GMP - 5/20

 RS: URS0000C6EDBB_1415775
MFE: -13.378
Ligand: cyclic-di-GMP
Species: Clostridium baratii str. Sullivan Cyclic di-GMP-II riboswitch
 RS: URS0000AB2A8C_12908
MFE: -33.910
Ligand: GMP
Species: unclassified sequences c-di-GMP-II-GAG riboswitch
 RS: URS00003AC1AB_212717
MFE: -10.395
Ligand: cyclic-di-GMP
Species: Clostridium tetani E88 Cyclic di-GMP-II riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
arrow right to the next 5prime UTR page
heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA092644 URS0000C6EDBB_1415775 URS0000AB2A8C_12908 URS00003AC1AB_212717
Length 84. 84. 85. 83.
Similarity - 0.984 0.984 0.984
Ensemble Norm 0.983 - - -
MFE -19.430 -13.378 -33.910 -10.395
Ligands - cyclic-di-GMP GMP cyclic-di-GMP
Gene RPL9 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3.002 3.001 6.
Length SE - 0. 1. 1.
Lev Distance - 20. 20. 19.
UBS 6. 5. 6. 5.
BS 0. 0. 0. 0.
ILL 0. 0. 1. 0.
ILR 0. 0. 1. 0.
H 3. 3. 3. 3.
BL 1. 2. 1. 2.
BR 3. 2. 2. 1.
UN 0.131 0.179 0.106 0.120

Sequences

Field Description
UTR seq + 25 acgcgauacaaguacguaaugacgacagacguucuuucuuugcugcgucuacugcgagaATGAAGACTATTCTCAGCAATCAGA
UTR dot + 25 .((((.(((……))).)).))..((((((…………))))))..((((((((((…..))))))).)))……
RS 1 seq AAAUUUGAUAGAAGCUAUGAAACAUAUUCUGUAUAUGGGCACUUGGAAUAUGUGGAGCUAGUAGUGCAACCGGCUAAUUAUUUU
RS 1 dot …(((.((((…)))).)))(((((((((…………)))))))))…((((.((……)).))))………
RS 2 seq GUCGUCGCGGGAGGCCAUGACACGCGGCCCGAACCCCGGCCGCCGGGACCGCGCCGAGCCACUGGCGAGACCGACCCGCGAAUGC
RS 2 dot (((((.((…..)).)))))..((((((……..))))))((((..(((((((……)))))….)).))))…….
RS 3 seq AUUUUAAGAGGAAAUUUUGAACUAUAUACUUAUUUGGGCACUUUGUAUAUAGGGAGUUAGUAGUGCAACCGACCUUGAUUAAU
RS 3 dot ..(((((((…..)))))))((((((((……………))))))))((.(((.((……)).)))))……..

Back to Ensemble of 20 Table

Back to Ensemble of 1 Table