Detected as a riboswitch by 3 out of 20 classifiers
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5HSAA096639 Similarity: 0.992 Similarity: 0.990 Similarity: 0.989
UTR: 5HSAA096639
Gene: SERPINB13
MFE: -8.250
ENS: 0.772
Length: 44.
Predicted Ligands:
preQ_1 - 18/20
SAM - 1/20
Ni/Co - 1/20
 RS: URS0000AB4DC1_362948
MFE: -4.776
Ligand: preQ_1
Species: Lactobacillus salivarius UCC118 PreQ1 riboswitch
 RS: URS0000C2DD64_67855
MFE: -8.833
Ligand: preQ_1
Species: Actinobacillus muris PreQ1 riboswitch
 RS: URS0000C19192_1497679
MFE: -8.556
Ligand: preQ_1
Species: Listeriaceae bacterium FSL A5-0209 PreQ1 riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA096639 URS0000AB4DC1_362948 URS0000C2DD64_67855 URS0000C19192_1497679
Length 44. 45. 44. 45.
Similarity - 0.992 0.990 0.989
Ensemble Norm 0.772 - - -
MFE -8.250 -4.776 -8.833 -8.556
Ligands - preQ_1 preQ_1 preQ_1
Gene SERPINB13 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 1.007 3.019 7.009
Length SE - 1. 0. 1.
Lev Distance - 10. 12. 12.
UBS 3. 2. 3. 4.
BS 0. 0. 0. 0.
ILL 1. 1. 0. 0.
ILR 1. 1. 1. 1.
H 1. 1. 1. 1.
BL 0. 0. 1. 1.
BR 0. 0. 1. 2.
UN 0.182 0.267 0.045 0.089

Sequences

Field Description
UTR seq + 25 aggucucgcuaaaaucaucATGGATTCACTTGGCGCCGTCAGCA
UTR dot + 25 .((…((((((((((……))))…))))))))…….
RS 1 seq UCCACACUGGUUCGUAAACAUCCCAGUUAAAAAAACUAGAAAGCA
RS 1 dot ……((((((….(((……)))…..))))))……
RS 2 seq UUGUUCGUGGUUCGUGAACCUCCCACGCAAAAAACUAAGGAUAU
RS 2 dot .(((((.(((((((((…….))))…..))))).))))).
RS 3 seq GUUUCCGUGGUUCGGGACAAUCCCACGUAAAAAAACUAAGGAGUG
RS 3 dot ..((((.(((((((((……)).))……))))).))))..

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