Detected as a riboswitch by 2 out of 20 classifiers
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5HSAA103295 Similarity: 0.990 Similarity: 0.988 Similarity: 0.988
UTR: 5HSAA103295
Gene: SPIC
MFE: -5.525
ENS: 0.691
Length: 51.
Predicted Ligands:
unknown - 12/20
glutamine - 4/20
SAM - 2/20
 RS: URS0000E5FE2F_1423763
MFE: -6.778
Ligand: unknown
Species: Lactobacillus kalixensis DSM 16043 DUF1646 RNA
 RS: URS0000DA86ED_396013
MFE: -17.570
Ligand: Ni/Co
Species: Oceanicola marinus SAM/SAH riboswitch
 RS: URS0000C437D4_12908
MFE: -10.186
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA103295 URS0000E5FE2F_1423763 URS0000DA86ED_396013 URS0000C437D4_12908
Length 51. 51. 52. 51.
Similarity - 0.990 0.988 0.988
Ensemble Norm 0.691 - - -
MFE -5.525 -6.778 -17.570 -10.186
Ligands - unknown Ni/Co glutamine
Gene SPIC - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 3. 3. 4.010
Length SE - 0. 1. 0.
Lev Distance - 13. 14. 15.
UBS 4. 3. 4. 5.
BS 0. 0. 0. 0.
ILL 0. 0. 1. 1.
ILR 0. 0. 1. 0.
H 2. 2. 2. 2.
BL 1. 0. 1. 0.
BR 2. 1. 1. 3.
UN 0.137 0.137 0.135 0.039

Sequences

Field Description
UTR seq + 25 cagaauugucaauuuauuaaugaaauATGACGTGTGTTGAACAAGACAAGC
UTR dot + 25 …….((((((((…….)))).))))((.((((……)))).))
RS 1 seq GGUUGGGGUUAGAUUGAAACUUUCAAGAUUUGCUUAUUUGGGUCAAUAAGC
RS 1 dot ..((((((((…….))))).)))…..(((((((……)))))))
RS 2 seq GCGCCGCCCCAACGGCUUCCUGACGGGGCAGGUCUGAACUUUUACCGGAGCA
RS 2 dot …..(((((..(((….)))..))))).(.((((………)))).).
RS 3 seq AUCGUUCAACUCUGAGGAGUCGGAAGUAAGCGAAAGCUGAAGGAACGCGCU
RS 3 dot .(((((..(((((((….))))).)).))))).(((((……)).)))

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