Detected as a riboswitch by 3 out of 20 classifiers
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5HSAA103838 Similarity: 0.990 Similarity: 0.989 Similarity: 0.989
UTR: 5HSAA103838
Gene: SRGAP3
MFE: -8.838
ENS: 0.679
Length: 54.
Predicted Ligands:
glutamine - 16/20
unknown - 3/20
SAM - 1/20
 RS: URS0000C79624_12908
MFE: -7.038
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C3A877_12908
MFE: -10.438
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000C2BFF1_12908
MFE: -7.816
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA103838 URS0000C79624_12908 URS0000C3A877_12908 URS0000C2BFF1_12908
Length 54. 54. 54. 53.
Similarity - 0.990 0.989 0.989
Ensemble Norm 0.679 - - -
MFE -8.838 -7.038 -10.438 -7.816
Ligands - glutamine glutamine glutamine
Gene SRGAP3 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 1.001 3.001 3.006
Length SE - 0. 0. 1.
Lev Distance - 13. 14. 13.
UBS 4. 4. 5. 3.
BS 0. 0. 0. 0.
ILL 1. 2. 1. 0.
ILR 2. 2. 2. 1.
H 1. 1. 1. 1.
BL 1. 1. 2. 1.
BR 1. 1. 2. 1.
UN 0.074 0.111 0.111 0.151

Sequences

Field Description
UTR seq + 25 ggacuugcgacugugucaggaucuaggcaATGTCATCTCAAACTAAGTTCAAGA
UTR dot + 25 (((((((.(((..((((……..))))..))).)……..))))))….
RS 1 seq AUCGUUCAUCCUUUCAUAGGACGGAAGUAAGUAAUGAUACUGAAGGAACGCAUC
RS 1 dot ..(((((.((…((((…((……..)).))))….))..)))))….
RS 2 seq AUCGUUCAUCCCUUAUAGGGUCGGAAGUAUGCUAUAAUGCAGAAGGAACGCAUC
RS 2 dot ..(((((.((..((((((.(((….).)).))))))….))..)))))….
RS 3 seq AUCGUUCAACUUCUUAGGAAGUCGGAAGUAGGUGAAAACUGAAGGAACGCGCC
RS 3 dot .((.((((((((((………))))))……….)))).))…….

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