Detected as a riboswitch by 8 out of 20 classifiers
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5HSAA104564 Similarity: 0.986 Similarity: 0.985 Similarity: 0.985
UTR: 5HSAA104564
Gene: STARD5
MFE: -17.370
ENS: 0.853
Length: 67.
Predicted Ligands:
fluoride - 19/20
cobalamin - 1/20

 RS: URS0000BF9BB3_743722
MFE: -11.059
Ligand: fluoride
Species: Sphingobacterium sp. 21 Fluoride riboswitch
 RS: URS0000DA04D3_1121390
MFE: -12.209
Ligand: fluoride
Species: Desulfacinum hydrothermale DSM 13146 Fluoride riboswitch
 RS: URS0000C39D77_1740090
MFE: -10.259
Ligand: fluoride
Species: Pedobacter sp. Hv1 Fluoride riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA104564 URS0000BF9BB3_743722 URS0000DA04D3_1121390 URS0000C39D77_1740090
Length 67. 66. 67. 66.
Similarity - 0.986 0.985 0.985
Ensemble Norm 0.853 - - -
MFE -17.370 -11.059 -12.209 -10.259
Ligands - fluoride fluoride fluoride
Gene STARD5 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 4.009 10.008 10.009
Length SE - 1. 0. 1.
Lev Distance - 16. 17. 16.
UBS 5. 4. 3. 3.
BS 0. 0. 0. 0.
ILL 0. 0. 1. 1.
ILR 1. 0. 1. 1.
H 2. 1. 1. 1.
BL 3. 3. 1. 1.
BR 1. 2. 1. 1.
UN 0.269 0.364 0.358 0.364

Sequences

Field Description
UTR seq + 25 auaacacccgcgaccccgcagcuaagcgcagcucccgacgcaATGGACCCGGCGCTGGCAGCCCAGA
UTR dot + 25 ………(((….))).(((.(((((.(.(((………))).)..))))))))……..
RS 1 seq UUGCGAAACGGAAAUGAUGCCUUCCGACUGAACCGCCUUAAAAAAGCUGAUGGCGUCUACUAAAAU
RS 1 dot ……………((((((.((.(.((……………))).)).))))))………
RS 2 seq AAAACGAAAGGCAAUGAAGUCUGCCUGAAACGCCCUCACGUUCUGGGAUGAUGACUUCUACUCACGC
RS 2 dot ……………((((((..((((.((((……)))).))))…..))))))………
RS 3 seq AGACAAAAAGGAAAUGGUGUCUUCCUACUUGAACCGCCUUAAAAAGCUGAUGACGCCUGGUUAUUA
RS 3 dot ……………((((((.((…(((………….)))..)).))))))………

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