Detected as a riboswitch by 10 out of 20 classifiers
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5HSAA106832 Similarity: 0.990 Similarity: 0.989 Similarity: 0.989
UTR: 5HSAA106832
Gene: TANK_0
MFE: -2.725
ENS: 0.849
Length: 47.
Predicted Ligands:
preQ_1 - 15/20
glutamine - 4/20
Ni/Co - 1/20
 RS: URS0000AB1925_71421
MFE: -2.490
Ligand: preQ_1
Species: Haemophilus influenzae Rd KW20 PreQ1 riboswitch
 RS: URS0000CADC1E_1599
MFE: -5.720
Ligand: preQ_1
Species: Lactobacillus sakei PreQ1
 RS: URS0000D68BEE_12908
MFE: -9.766
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA106832 URS0000AB1925_71421 URS0000CADC1E_1599 URS0000D68BEE_12908
Length 47. 45. 46. 47.
Similarity - 0.990 0.989 0.989
Ensemble Norm 0.849 - - -
MFE -2.725 -2.490 -5.720 -9.766
Ligands - preQ_1 preQ_1 glutamine
Gene TANK - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 2. 2.002 5.
Length SE - 4. 1. 0.
Lev Distance - 9. 13. 14.
UBS 2. 2. 2. 3.
BS 0. 0. 0. 0.
ILL 1. 0. 0. 0.
ILR 0. 0. 0. 1.
H 1. 1. 2. 1.
BL 0. 1. 0. 1.
BR 0. 0. 0. 1.
UN 0.191 0. 0.239 0.170

Sequences

Field Description
UTR seq + 25 ugaugcuacaggacgaagaggaATGGATAAAAACATTGGCGAGCAAC
UTR dot + 25 …(((((…………..(((……..))))))))……
RS 1 seq CCCCCCGUAGUUCGCAAACCUCCUACAAUAAAAAACUAGGUAAAA
RS 1 dot ….((.(((((…………………)))))))…..
RS 2 seq AAAAACGUGGUUCGUAACCAUCCCACGCUAAAAAAACUAGGAGGAU
RS 2 dot …..(((((…………)))))(((…….)))……
RS 3 seq AUCGUUCAUCCCGUAAGGGACGCAAAAGCCGACUGAAGGAACGGGAU
RS 3 dot .((.((((((((….))))………….)))).))…….

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