Detected as a riboswitch by 20 out of 20 classifiers
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5HSAA108462 Similarity: 0.981 Similarity: 0.980 Similarity: 0.979
UTR: 5HSAA108462
Gene: TEX12
MFE: -21.231
ENS: 0.977
Length: 92.
Predicted Ligands:
zmp-ztp - 15/20
TPP - 3/20
GMP - 1/20
 RS: URS000231D2E5_1519495
MFE: -40.006
Ligand: zmp-ztp
Species: Streptomyces sp. NRRL F-6491 ZMP/ZTP riboswitch
 RS: URS0000DA2831_310780
MFE: -43.783
Ligand: zmp-ztp
Species: Streptomyces rubidus ZMP/ZTP riboswitch
 RS: URS0000D8B336_362257
MFE: -35.882
Ligand: zmp-ztp
Species: Streptomyces vietnamensis ZMP/ZTP riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA108462 URS000231D2E5_1519495 URS0000DA2831_310780 URS0000D8B336_362257
Length 92. 91. 93. 91.
Similarity - 0.981 0.980 0.979
Ensemble Norm 0.977 - - -
MFE -21.231 -40.006 -43.783 -35.882
Ligands - zmp-ztp zmp-ztp zmp-ztp
Gene TEX12 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 7.004 3.002 2.
Length SE - 1. 1. 1.
Lev Distance - 22. 24. 26.
UBS 8. 9. 8. 8.
BS 0. 0. 0. 0.
ILL 0. 0. 1. 1.
ILR 2. 1. 1. 1.
H 3. 3. 3. 3.
BL 3. 5. 2. 3.
BR 3. 2. 3. 3.
UN 0.130 0.066 0.086 0.110

Sequences

Field Description
UTR seq + 25 acucccucgcguucgcugacgaggaagguccccauaccgcgaacuuuguagcuggugccuucggaauATGATGGCAAATCACCTTGTAAAGC
UTR dot + 25 ….(((((((…..)).)))))..(((……)))…..(((((.((.(((((((.(((…..))).))))..))).))..))))).
RS 1 seq GGCACGCACGGCGACUGGCGUACGGGGAAGCGACCCCGGGGAAGUCGUGCGCGGCAGACCACACGAGGCGCCGCCCGCCUGGGCGUCCCGG
RS 1 dot …((((.(((…))))))).(((((……)))))((((.((((((.(((((.(.((……)))))))).)))…))).))))..
RS 2 seq ACGGCGAGCCGUGACUGGCGCGCAGGGAUGGGGUCAACCAUCGGGGAGCGGCUCGUCGCCACCACACAUGUGCCGUGCGCCUGGGCCGUCCCG
RS 2 dot …(((.((((….)))).)))…(((((……))))).((((.(((((((..((((((((….)))..))).)).))))))))))).
RS 3 seq AACACGCACGGCGACUGGCGUACGGGGAAGCGACCCCGGGGAAGCCGCGCGCGCUCCACCACACGAGGUGCCGCUCGCCUGGGCAUCACGG
RS 3 dot …((((.(((…))))))).(((((……)))))..((.((((((.(((…((((……)))).))).)))…))).))….

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