Detected as a riboswitch by 14 out of 20 classifiers
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5HSAA108994 Similarity: 0.989 Similarity: 0.988 Similarity: 0.987
UTR: 5HSAA108994
Gene: THBD
MFE: -17.
ENS: 0.888
Length: 52.
Predicted Ligands:
glutamine - 10/20
unknown - 8/20
SAM - 1/20
 RS: URS0000D68C5A_12908
MFE: -8.266
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000D6CDD7_983917
MFE: -25.445
Ligand: unknown
Species: Rubrivivax gelatinosus IL144 nhaA-I RNA
 RS: URS0000E6029B_1120688
MFE: -17.042
Ligand: unknown
Species: Rhizobium sp. LC145 sul1 RNA
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA108994 URS0000D68C5A_12908 URS0000D6CDD7_983917 URS0000E6029B_1120688
Length 52. 52. 52. 51.
Similarity - 0.989 0.988 0.987
Ensemble Norm 0.888 - - -
MFE -17. -8.266 -25.445 -17.042
Ligands - glutamine unknown unknown
Gene THBD - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 4.003 4.013 3.023
Length SE - 0. 0. 1.
Lev Distance - 14. 15. 15.
UBS 5. 4. 5. 5.
BS 0. 0. 0. 0.
ILL 1. 0. 0. 2.
ILR 2. 1. 1. 1.
H 1. 1. 1. 1.
BL 1. 2. 2. 2.
BR 1. 1. 2. 1.
UN 0.231 0.173 0.115 0.078

Sequences

Field Description
UTR seq + 25 uauaaacucgagcccuggccgauccgcATGCTTGGGGTCCTGGTCCTTGGCG
UTR dot + 25 ………..(((..(((((((((.((….)))))))..)).))..))).
RS 1 seq GUCGUUCAUCCUUUUUUUAUGAGGACGCAAAAGUUUACUGAAGGAACGGGAA
RS 1 dot ……..(((((((((((.(.((((……)))).))))))))..)))).
RS 2 seq GGGUGCCGUGGCGACCGCCGCGGCAGGUUCAUGCGCAGGUCGGGCCGCCGCG
RS 2 dot ……(((((((.(((((((.(((……))))).)).)))..)))))))
RS 3 seq ACCGGACCCGCACAGCGGGUGGCUCCUCCGAGCGCCAUCCCUCGGUAACCA
RS 3 dot …((..(((…((.(((((((.(……).))))))))))))…)).

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