Detected as a riboswitch by 5 out of 20 classifiers
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5HSAA115222 Similarity: 0.989 Similarity: 0.989 Similarity: 0.988
UTR: 5HSAA115222
Gene: TULP1
MFE: -16.792
ENS: 0.725
Length: 54.
Predicted Ligands:
unknown - 14/20
glutamine - 5/20
homocysteine - 1/20
 RS: URS0000C3A877_12908
MFE: -10.438
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
 RS: URS0000E600DB_1860125
MFE: -24.826
Ligand: unknown
Species: Erythrobacter sp. QSSC1-22B sul1 RNA
 RS: URS0000C79624_12908
MFE: -7.038
Ligand: glutamine
Species: unclassified sequences Glutamine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA115222 URS0000C3A877_12908 URS0000E600DB_1860125 URS0000C79624_12908
Length 54. 54. 54. 54.
Similarity - 0.989 0.989 0.988
Ensemble Norm 0.725 - - -
MFE -16.792 -10.438 -24.826 -7.038
Ligands - glutamine unknown glutamine
Gene TULP1 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 2.001 4.005 2.001
Length SE - 0. 0. 0.
Lev Distance - 14. 14. 15.
UBS 4. 5. 3. 4.
BS 0. 0. 0. 0.
ILL 1. 1. 0. 2.
ILR 2. 2. 1. 2.
H 1. 1. 1. 1.
BL 2. 2. 2. 1.
BR 1. 2. 0. 1.
UN 0.148 0.111 0.222 0.111

Sequences

Field Description
UTR seq + 25 gagaaaggggugcgauaggcaaaggcaccATGCCTCTGCGGGATGAAACCCTCC
UTR dot + 25 ……(((((.((….(((.(((((…))))).)))….))..)))))..
RS 1 seq AUCGUUCAUCCCUUAUAGGGUCGGAAGUAUGCUAUAAUGCAGAAGGAACGCAUC
RS 1 dot ..(((((.((..((((((.(((….).)).))))))….))..)))))….
RS 2 seq AUCGGACCCGGCGCUGCCGGGUGGCUCGGCCCGGCGCCUAUCCCCGGGACAAUG
RS 2 dot ……(((((.((.(((((((……)))))))))……)))))……
RS 3 seq AUCGUUCAUCCUUUCAUAGGACGGAAGUAAGUAAUGAUACUGAAGGAACGCAUC
RS 3 dot ..(((((.((…((((…((……..)).))))….))..)))))….

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