Detected as a riboswitch by 1 out of 20 classifiers
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5HSAA116560 Similarity: 0.982 Similarity: 0.982 Similarity: 0.981
UTR: 5HSAA116560
Gene: UCHL1
MFE: -34.768
ENS: 0.766
Length: 87.
Predicted Ligands:
GMP - 4/20
zmp-ztp - 4/20
TPP - 3/20
 RS: URS0000AB71A5_12908
MFE: -34.874
Ligand: GMP
Species: unclassified sequences c-di-GMP-II-GAG riboswitch
 RS: URS0000C3EB9F_1081109
MFE: -19.921
Ligand: TPP
Species: Aschersonia aleyrodis RCEF 2490 TPP riboswitch (THI element)
 RS: URS0000DB2471_1898743
MFE: -38.275
Ligand: zmp-ztp
Species: Curtobacterium sp. MMLR14_010 ZMP/ZTP riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA116560 URS0000AB71A5_12908 URS0000C3EB9F_1081109 URS0000DB2471_1898743
Length 87. 85. 87. 86.
Similarity - 0.982 0.982 0.981
Ensemble Norm 0.766 - - -
MFE -34.768 -34.874 -19.921 -38.275
Ligands - GMP TPP zmp-ztp
Gene UCHL1 - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 4. 6.001 3.
Length SE - 4. 0. 1.
Lev Distance - 18. 22. 24.
UBS 8. 7. 6. 8.
BS 0. 0. 0. 0.
ILL 1. 1. 1. 1.
ILR 1. 2. 1. 2.
H 2. 2. 2. 2.
BL 3. 4. 2. 4.
BR 3. 2. 2. 4.
UN 0.069 0.082 0.092 0.081

Sequences

Field Description
UTR seq + 25 ggcccggccguaccacuccgcgcugcgcacggggggcuauuucugccgggcgcuccgcgaagATGCAGCTCAAGCCGATGGAGATCA
UTR dot + 25 .(((((((.(((((.(((((.((…)).))))))).)))….))))))).(((((((…..((…….)))).)))))….
RS 1 seq ACGGGUGCGGGAGGCGAUGACACGCGGCUCGCAUGACGGCCGCCUGAGCCGCGCCGAGCCACUGGCGAGACCGAGCCGCUCUGAU
RS 1 dot …(((((((.(((((.((.((.(((…))).)).))..)))))…)))))))((((….(((……..)))))))….
RS 2 seq GUGGAUCAUGGGGGGUGUGGCUGAGAUUAUACGGCCCUGUACUUGAUCUGGAUAAUACCAGCGAAAGGAUCAUGCUUGUCCCUCCCC
RS 2 dot ..((((((.(((((.((((……….)))).))))…).))))))(((((…..(((………..))))))))……
RS 3 seq UCGUCCUGUCGCGACUGGCGUCGGAUGGGUCACCAUCAGGGAGCGACACUCGACACGGUGCGUGGCCGUCCGCCUGGGCCACGCCG
RS 3 dot ….(((((((.(..(.((.((.(((((….)))))..)).)).)..).))))).)).((((((((………))))))))..

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