Detected as a riboswitch by 1 out of 20 classifiers
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5HSAA117252 Similarity: 0.979 Similarity: 0.979 Similarity: 0.979
UTR: 5HSAA117252
Gene: UROS
MFE: -17.707
ENS: 0.763
Length: 89.
Predicted Ligands:
zmp-ztp - 6/20
TPP - 5/20
glycine - 2/20
 RS: URS0000ABB0D4_888056
MFE: -25.542
Ligand: TPP
Species: Actinomyces sp. oral taxon 448 str. F0400 TPP riboswitch (THI element)
 RS: URS0000C7BB25_1519493
MFE: -37.535
Ligand: zmp-ztp
Species: Streptomyces sp. NRRL B-3648 ZMP/ZTP riboswitch
 RS: URS0000C7D578_1794906
MFE: -19.032
Ligand: glycine
Species: Marinobacter sp. T13-3 Glycine riboswitch
image of 5prime UTR secondary structure image of the secondary structure of the first Riboswitch match image of the secondary structure of the second Riboswitch match image of the secondary structure of the third Riboswitch match
circular plot of the 5prime UTR base pairs circular plot of the 5prime UTR base pairs compared with the first Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the second Riboswitch base pairs circular plot of the 5prime UTR base pairs compared with the third Riboswitch base pairs
line plot comparing the structural features of the 5prime UTR with its first riboswitch match line plot comparing the structural features of the 5prime UTR with its second riboswitch match line plot comparing the structural features of the 5prime UTR with its third riboswitch match
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heatmap comparing sequence features of the 5prime UTR and top three riboswitch matches
Heatmap of base pair probabilities for 1000 computational NUPACK foldings of the 5prime UTR
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon unbound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR that leave the start codon bound
Heatmap of base pair probabilities for computational NUPACK foldings of the 5prime UTR with the bound and unbound conformers overlaid
ML ensemble output for the 5prime UTR

Information

  5’UTR RS match 1 RS match 2 RS match 3
Link - RNAcentral RNAcentral RNAcentral
ID 5HSAA117252 URS0000ABB0D4_888056 URS0000C7BB25_1519493 URS0000C7D578_1794906
Length 89. 90. 89. 88.
Similarity - 0.979 0.979 0.979
Ensemble Norm 0.763 - - -
MFE -17.707 -25.542 -37.535 -19.032
Ligands - TPP zmp-ztp glycine
Gene UROS - - -
Downstream protein Genecard - - -

Similarity metrics

  5’UTR RS match 1 RS match 2 RS match 3
Struct SE - 2.002 1.002 2.002
Length SE - 1. 0. 1.
Lev Distance - 26. 28. 27.
UBS 8. 8. 8. 9.
BS 0. 0. 0. 0.
ILL 1. 1. 2. 1.
ILR 2. 2. 2. 2.
H 3. 2. 3. 3.
BL 3. 2. 3. 4.
BR 3. 3. 3. 3.
UN 0.079 0.122 0.124 0.034

Sequences

Field Description
UTR seq + 25 cuagcugcgcgcagccacccacgcgaccccagucugagugcccuauaaggacugccaggcaauaATGAAGGTTCTTTTACTGAAGGATG
UTR dot + 25 …((((….))))(((.((.((…….)).)).))).((((.(((((((..((……..))..))))))).)…..)))…
RS 1 seq UCUACCGACACGGGGUGCCGCAAGGCUGAGAACACACCCGUCGAACCUGUUCGGACAAUGCUGACGAAGGGAUUGUCGCAUGCGCAGAUG
RS 1 dot …..((((..((((((((….)))…….)).)))))))…((((.((((((((.((……)).))))))…)).))))…
RS 2 seq CGAACGGGCCGUGACUGGCGCGCUGGGAUGGGACGGACCAUCAGGGAGCGGCCCGAGCGGGAAGAGUGCCGUGCGCCUGGGCCGAACGU
RS 2 dot ….((.((((….)))).))((..(((((……)))))..))..(((((((.(((.(..(….)..).))).)))))))…..
RS 3 seq GCGAUCCCCGCAGGAGAGAGGGCGCUGCAAGCCCCGCCGAAGGCGCAAACUCCCAUAAACGCUCAGGCACAAGUACUGCGACCAUCAA
RS 3 dot (((…..))).((…(.((((…….))))).))((.((((((.(((.((………..))….)))..)))).)).))..

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